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Monday, 24 September 2012

An Overview of Structural Bioinformatics


Bioinformatics aims at applying computer science methods to the affluence of data collected in a variety of experiments in life sciences (e.g. cell and molecular biology, biochemistry, medicine, etc.)  in order to help analysing such data and eliciting new knowledge from it.Read more

Structural Bioinformatics is a field, having its major aim to give computational approaches to predict and analyze the spatial structure of macromolecules like proteins, DNA, and RNA. Their 3D structure is predicted based on the 1D structure, the nucleotide or amino acid sequence, which is obtained from genome sequencing. Deliberating and understanding their 3D structure is crucial for inferring and modifying their function. Direct applications could be in medical and pharmacological fields  especially for drug design, where it is important to determine which groups of ligands bind and regulate a protein, which proteins are potential targets for drugs, etc.

Promises of Structural Bioinformatics

• creating an infrastructure for building up structural models from component parts
• understanding structural basis of biological phenomena (or differently put: understanding structure-to-     function principles)
• gaining the ability to understand the design principles of proteins so that new functionalities can be created
• learning how to design drugs efficiently based on structural knowledge of their target
• catalyzing the development of simulation models that can give insight into function based on structural simulations by using computers…… Read more

 Murrayaquinone B: 2D and 3D structure prepared in chemoffice.